PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g00200.1
Common NameZOSMA_4G00200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 236aa    MW: 26189.4 Da    PI: 5.8397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08134174954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Zosma4g00200.1 134 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 174
                     699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-14126186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-15129187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-6135174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-6148179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEFEFLDPTD VQQQMELLTM MLQMENQPEF YQTPPPFNNS SIQDYEYFSS ATTGSTGGGG  60
GSMSSSSPSS FPPPPPPPSV LPPSTVLFDP SMDAMREMVF RIAAMQPVDI DPRTVKAPKR  120
RNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKSQLQS  180
LEQVATSNRN RSGSSSTTFT SATTEAGFST VGGGTTLENY WCYDNQQPQY NNVLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174318.12e-56PREDICTED: transcription factor HEC2-like
SwissprotQ9FHA71e-44HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A0K9NY641e-174A0A0K9NY64_Z
STRINGGSMUA_Achr9P15380_0012e-52(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-38bHLH family protein